Scientists propose revolutionary DNA-based approach to map the wiring diagram of the brain
A team of neuroscientists has proposed a new and potentially revolutionary way of obtaining a neuronal connectivity map (the "connectome") of the whole brain of the mouse. The details are set forth in an essay published October 23 in the open-access journal PLOS Biology. The team, led by Professor Anthony Zador, Ph.D., of Cold Spring Harbor Laboratory, aims to provide a comprehensive account of neural connectivity. At present the only method for obtaining this information with high precision relies on examining individual cell-to-cell contacts (synapses) in electron microscopes. But such methods are slow, expensive and labor-intensive.
Zador and colleagues instead propose to exploit high-throughput DNA sequencing to probe the connectivity of neural circuits at the resolution of single neurons.
"Our method renders the connectivity problem in a format in which the data are readable by currently available high-throughput genome sequencing machines," says Zador. "We propose to do this via a process we're now developing, called BOINC: the barcoding of individual neuronal connections."
The proposal comes at a time when a number of scientific teams in the U.S. are progressing in their efforts to map connections in the mammalian brain. These efforts use injections of tracer dyes or viruses to map neuronal connectivity at a "mesoscopic" scale -- a mid-range resolution that makes it possible to follow neural fibers between brain regions. Other groups are scaling up approaches based on electron microscopy.
Zador's team wants to trace connectivity "beyond the mesoscopic," at the level of synaptic contacts between pairs of individual neurons, throughout the brain. The BOINC barcoding technique, now undergoing proof-of-concept testing, will be able, says Zador, "to provide immediate insight into the computations that a circuit performs." In practice, he adds, most neural computations are not currently understood at this level of precision, partly because detailed circuit information is not available for mammals. The BOINC method promises to be much faster and cheaper than approaches based on electron microscopy, Zador says.
The BOINC method consists of three steps. First, each neuron is labeled with a specific DNA barcode. A barcode consisting of just 20 random DNA "letters" can uniquely label a trillion neurons -- many more than exist in the mouse brain.
The second step looks at neurons that are synaptically connected, and associates their respective barcodes with one other. One way to do this is by exploiting a virus such as the pseudorabies virus, which can move genetic material across synapses.
"To share barcodes across synapses, the virus must be engineered to carry the barcode within its own genetic sequence," explains Zador. "After the virus spreads across synapses, each neuron effectively ends up as a bag of barcodes, comprising its own code and those from synaptically coupled partners."
The third step involves joining barcodes from synaptically connected neurons to make single pieces of DNA, which can then be read via existing high-throughput DNA sequencing methods. These double-barcode sequences can then be analyzed computationally to reveal the synaptic wiring diagram of the brain.
Taken together, says Zador, if BOINC succeeds in its current proof-of-concept tests, it will offer a dramatically inexpensive and rapid means of assembling a connectome, even of the complex brains of mammals.
Source: Cold Spring Harbor Laboratory
Articles on the same topic
- Neuroscientists propose revolutionary DNA-based approach to map wiring of whole brainTue, 23 Oct 2012, 18:04:28 EDT
- Neuroscientists propose revolutionary DNA-based approach to map wiring of whole brainfrom Science DailyTue, 23 Oct 2012, 18:00:41 EDT
- Circuit diagram of the mouse brain: Scientists aim to analyse a whole mouse brain under the electron microscopefrom Science DailyTue, 23 Oct 2012, 15:31:54 EDT
Latest Science NewsletterGet the latest and most popular science news articles of the week in your Inbox! It's free!
Check out our next project, Biology.Net
From other science news sites
Popular science news articles
- Astronomers release spectacular survey of the distant universe
- Immune system link to kidney disease risk, research finds
- Adélie penguin population in Antarctica threatened by climate change
- Air pollution linked to increased rates of kidney disease
- The Lancet: Zika virus identified in brain and placenta tissue, strengthening link to birth defects
- 'Bugs' on the subway: Monitoring the microbial environment to improve public health
- RIT professors create new method for identifying black holes
- Sign languages provide insight into universal linguistic short-cuts
- The brain watched during language learning
- Climate study finds human fingerprint in Northern Hemisphere greening
- High levels of education linked to heightened brain tumor risk
- NASA sees Tropical Storm Danielle ending over Mexico
- Researchers provide new insights on coral bleaching
- Has incidence of Parkinson's disease increased over past 30 years?
- Mayo Clinic study shows increase in Parkinson's disease over 30 years